PR-INBRE Bioinformatics Community of Practice (BiCoP) Training

PSC is hosting two training sessions for members of PR-INBRE Bioinformatics Community of Practice (BiCoP).

A full-day workshop focused on Bridges-2 and containerization will be hosted at the University of Puerto Rico on March 19, 2024.

A two-day workshop focused on data exploration on Bridges-2 will be hosted at the Universidad Ana G. Mendez on March 20-21, 2024.

 

A Practical Introduction to Apptainer on Bridges-2

March 19, 2024
University of Puerto Rico – Medical Campus
Center for Informatics and Technology – 8th floor

You are invited to attend a comprehensive, full-day workshop hosted at the University of Puerto Rico. This workshop is designed for professionals and enthusiasts seeking to deepen their understanding of containerization in HPC systems.

The workshop will provide focused exploration of Apptainer on Bridges-2, offering participants an opportunity to gain practical insights and knowledge in this area.

Apptainer streamlines container creation and execution processes. This session will focus on practical applications, including:

This workshop is open to members of PR-INBRE Bioinformatics Community of Practice (BiCoP).

Who should attend? Faculty, research staff and students looking to learn more about containerization on Bridges-2.

Why should I attend? Faculty and research staff members stand to gain valuable insights by learning how containers enhance reproducibility within the framework of open science and the FAIR principles. Understanding containerization techniques empowers researchers to increase the credibility and impact of their work, facilitate collaboration, streamline research workflows, ensure research longevity, strengthen funding opportunities, and foster ongoing professional development. These skills not only contribute to individual research endeavors but also promote transparency, rigor, and efficiency within the broader scientific community.

Breakfast and lunch will be provided.

Registration

If you do not have an ACCESS ID, then visit https://access-ci.org and create an account.

 You need to create an account before registering for this workshop.

Data Exploration of HuBMAP data on Bridges-2: HuBMAP’s scRNA-seq Data Analysis, Venn diagrams, and Gene Ontology Enrichment Analysis (GOEA)

March 20-21, 2024
Ana G. Mendez
Muñiz-Souffront 120

The Human Biomolecular Atlas Program (HuBMAP) is a program funded by the US National Institutes of Health to characterize the human body at single cell resolution, integrated to other efforts such as the Human Cell Atlas.

You are invited to attend a comprehensive, two-day workshop hosted at the Universidad Ana G. Mendez. This workshop is designed for professionals and enthusiasts seeking to deepen their understanding of data exploration and analysis with Python, single-cell RNA Sequencing Data Analysis of data from the Human Biomolecular Atlas Program (HuBMAP), Venn diagrams and Gene Ontology Enrichment Analysis (GOEA).

This workshop is open to members of PR-INBRE Bioinformatics Community of Practice (BiCoP).

Who should attend? Faculty, research staff and students looking to learn more about data exploration on public data from HuBMAP using OpenOnDemand on Bridges-2.

Why should I attend? Data exploration from HuBMAP public data within the context of open science and FAIR principles fosters collaborative research and knowledge discovery. Researchers can freely access and analyze diverse datasets encompassing human tissue samples, promoting transparency and reproducibility in biomedical research. By adhering to FAIR principles, HuBMAP ensures that data are findable, accessible, interoperable, and reusable, facilitating comprehensive exploration of human biology and disease mechanisms across scientific disciplines. This open approach empowers scientists to uncover novel insights into tissue architecture, cellular interactions, and molecular profiles, advancing our understanding of human health and paving the way for innovative medical interventions.

Breakfast and lunch will be provided.

Registration

If you do not have an ACCESS ID, then visit https://access-ci.org and create an account.

 You need to create an account before registering for this workshop.