BAMTOOLS

BAMTools is a C++ API and command line toolkit for workling with BAM data.

Documentation

• Web site
• BAMTools wiki, includes a link to a tutorial

Usage on Bridges-2

To see what versions of BAMTools are available, the default version if there is more than one, and some help,  type

module spider bamtools

To use BAMTools, include a command like this in your batch script or interactive session to load the BAMTools module. Note that the module load command is case sensitive:

module load bamtools