tRNAscan-SE

tRNAscan-se searches for tRNA genes in genomic sequences.

Documentation

• Help for tRNAscan-se
• Citation:  If you use tRNAscan-se, please cite these publications:

Lowe, T.M. & Chan, P.P. (2016) tRNAscan-SE On-line: Search and Contextual Analysis of Transfer RNA Genes. Nucl. Acids Res. 44: W54-57.

Lowe, T.M. & Eddy, S.R. (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucl. Acids Res. 25: 955-964.

Usage on Bridges-2

To see what versions of tRNAscan-se are available and if there is more than one, which is the default, along with some help,  type

module spider trnascan-se

To use tRNAscan-se, include a command like this in your batch script or interactive session to load the trnascan-se module:

module load trnascan-se

Be sure you also load any other modules needed, as listed by the module spider trnascan-se command.